GnpIS is an integrative, multi-species information system dedicated to plants, including forest trees. It handles different types of data with a focus on genetic resources and phenomics. It enables researchers from the plant comunity to access and cross-reference genetic data (accessions, phenotypes, markers, QTLs, polymorphisms, association genetics) and genomic data (sequences, physical maps, genome annotations and expression data) for species of agronomic and forestry interest. GnpIS is accessible via a web portal and enables different types of data to be browsed, either independently via dedicated interfaces, or simultaneously using search tools. GnpIS gives value to the datasets it contains by enabling their interoperability and reusability through the use of internationally agreed standards and ontologies. It is continuously improving its compliance to the FAIR principles (Findable, Accessible, Interoperable, Reusable). To enhance the findability and accessibility of the submitted datasets, we collaborate with Data INRAE to associate a DOI (Digital Object Identifier) to your dataset along with its integration in GnpIS. GnpIS is used by INRAE and major national and international projects.It is provided by URGI, a plant bioinformatics platform (https://urgi.versailles.inrae.fr/) For the species list See : https://urgi.versailles.inrae.fr/Species/Forest-trees
At the national scale: Institut Français de Bioinformatique (IFB), Phenome-EMPHASIS (plant phenomics infrastructure), RARe (research infrastructure for agronomic BRCs) In-Sylva FRANCE (research infrastructure for adaptative management in forests), the PEPR Agroecology and Digital projects AgroDiv and BReIF. At the international scale: ELIXIR (European life sciences infrastructure), Wheat Initiative, International Wheat Genome Sequencing Consortium (IWGSC), EOSC-Life and the projects AGENT, PRO-GRACE, AgroServ and PHENET.
 URGI create and provide guidelines to help the Plant community with the best practices for a FAIR data management. For instance guidelines in Plant science : https://rdmkit.elixir-europe.org/plant_sciences (Germplasm (meta)data collection and sharing, Phenotyping (meta)data collection and publication, Genotyping (meta)data collection and publication) We also create training courses and materials to disseminate the best practices for a FAIR management of phenotyping data. You can find our training sessions and materials on ELIXIR training catalog TeSS (Training eSupport System) and on IFB moodle.
bioinformatics, genomic data, plant genetic resource, genetic polymorphism, information system, data interoperability, nosql database, data warehouse, FAIR data, open data, relational database
Abies, Acacia, Acer, Alnus, Betula, Calocedrus, Carpinus, Castanea, Cedrus, Cryptomeria, Cupressus, Eucalyptus, Fagus, Fraxinus, Juglans, Larix, Liriodendron, Nothofagus, Picea, Pinus, Platanus, Populus, Prunus, Pseudotsuga, Quercus, Robinia, Salix, Sorbus, Taxus, Thuja, Ulmus